RNA Loop Modeling

Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.

RLooM: RNA Loop Modeling based on homology and geometric constraints

Please, view the tutorial and/or the RLML description if you need a short introduction.

Step 1: Upload an RNA structure file.
Example structure

Step 2: Choose one.

Scan structure for anchor site suggestions.
Submit loop modeling commands.

Modeling commands
RLML description

Use cluster set

Distance Constraints
Maximum anchor distance		Clash threshold