Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb7msf1S.e3-8
Source: [PDB-id:chain] 7msf:S (&rarr PDB)
Source: Information MS2 PROTEIN CAPSID/RNA COMPLEX
Source: Compound 5'-R(*UP*CP*GP*CP*CP*AP*AP*CP*AP*GP*GP*CP*GP*G)-
Source: Resolution 2.80 ANGSTROMS.
Position (3, 8)
Primary structure ('_': anchors) _AACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C3'-exo, 4: C3'-exo, 5: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 4 ↑
3 2 6 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 3 4 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters