Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb484d1B.e11-19
Source: [PDB-id:chain] 484d:B (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF HIV-1 REV PEPTIDE-RNA APTAMER COMPLEX
Source: Compound RNA APTAMER
Source: Resolution NOT APPLICABLE.
Position (11, 19)
Primary structure ('_': anchors) _GUGCUGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 5: C4'-exo, 6: C1'-exo, 7: C2'-endo, 8: C4'-exo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 6 →
3 7 8 ↑
4 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Hoogsteen/Sugar trans
3 4 7 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters