Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb3tra1A.e31-39
Source: [PDB-id:chain] 3tra:A (&rarr PDB)
Source: Information RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS
Source: Compound TRNAASP
Source: Resolution 3.00 ANGSTROMS.
Position (31, 39)
Primary structure ('_': anchors) _UUGUCGC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 2 3 →
3 4 5 ↑
4 5 6 ↑
5 6 7 ↑
6 7 8 ↑
7 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters