Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb3epk1F.e29-37
Source: [PDB-id:chain] 3epk:F (&rarr PDB)
Source: Information CRYSTALLOGRAPHIC SNAPSHOTS OF EUKARYOTIC DIMETHYLALLYLTRANSFERASE ACTING ON TRNA: INSIGHT INTO TRNA RECOGNITION AND REACTION MECHANISM
Source: Compound TRNA
Source: Resolution 3.20 ANGSTROMS.
Position (29, 37)
Primary structure ('_': anchors) _UUGCAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C3'-exo, 3: C3'-exo, 4: C3'-exo, 5: C3'-exo, 6: C2'-endo, 7: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 8 →
3 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Watson-Crick/O2' ?
3 2 8 Watson-Crick/Watson-Crick trans y
4 3 6 Bifurcated/O2' ?
5 5 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters