Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb3epk1E.e30-36
Source: [PDB-id:chain] 3epk:E (&rarr PDB)
Source: Information CRYSTALLOGRAPHIC SNAPSHOTS OF EUKARYOTIC DIMETHYLALLYLTRANSFERASE ACTING ON TRNA: INSIGHT INTO TRNA RECOGNITION AND REACTION MECHANISM
Source: Compound TRNA
Source: Resolution 3.20 ANGSTROMS.
Position (30, 36)
Primary structure ('_': anchors) _UGCAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C3'-exo, 2: C3'-exo, 3: C3'-exo, 4: C3'-exo, 5: C2'-endo, 6: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 Watson-Crick/O2' ?
2 1 7 Watson-Crick/Watson-Crick cis y
3 2 5 Bifurcated/O2' ?
4 4 5 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters