Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'11-Segment pdb3eoh1A.i131-143
Source: [PDB-id:chain] 3eoh:A (&rarr PDB)
Source: Information REFINED GROUP II INTRON STRUCTURE
Source: Compound GROUP IIC INTRON
Source: Resolution 3.12 ANGSTROMS.
Position (131, 143)
Primary structure ('_': anchors) _AGGAACACGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 5: C2'-endo, 6: C2'-endo, 7: C2'-endo, 8: C2'-endo, 9: C2'-endo, 10: C2'-endo, 13: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 4: syn, 5: syn, 9: syn, 11: unknown
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 13 ↑
2 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 10 Sugar/Hoogsteen trans y
2 6 7 Bifurcated/O2' ?
3 8 9 Hoogsteen/O2' ?
4 9 10 C/O2' ?
5 10 12 O2'/C ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters