Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-7-Internal Loop pdb3eog1A.n77-101
Source: [PDB-id:chain] 3eog:A (&rarr PDB)
Source: Information CO-CRYSTALLIZATION SHOWING EXON RECOGNITION BY A GROUP II INTRON
Source: Compound GROUP IIC INTRON
Source: Resolution 3.39 ANGSTROMS.
Position (74, 109), (77, 101)
Primary structure ('_': anchors) _AA_-_GAAGGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		10: C4'-exo, 11: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 6 &larr
3 3 4 ↑
4 3 11 →
5 5 6 ↑
6 10 12 →
7 11 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 11 Watson-Crick/O2' cis y
3 3 6 O2'/Bifurcated trans
4 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters