Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Segment pdb3e5f1A.i35-40
Source: [PDB-id:chain] 3e5f:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURES OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SE-SAM
Source: Compound SMK BOX (SAM-III) RIBOSWITCH FOR RNA
Source: Resolution 2.70 ANGSTROMS.
Position (35, 40)
Primary structure ('_': anchors) _GUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C1'-exo, 3: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 4 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters