Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-1-Internal Loop pdb3e5cFA.n14-27
Source: [PDB-id:chain] 3e5c:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE SMK BOX (SAM-III) RIBOSWITCH WITH SAM
Source: Compound SMK BOX (SAM-III) RIBOSWITCH
FLIPPED INTERNAL
Source: Resolution 2.25 ANGSTROMS.
Position (12, 32), (14, 27)
Primary structure ('_': anchors) _GAUG_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C1'-exo, 4: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 4
2 5 6
3 7 8
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 5 8 Watson-Crick/Watson-Crick cis
3 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters