Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb3dllFX.n2258-2299
Source: [PDB-id:chain] 3dll:X (&rarr PDB)
Source: Information THE OXAZOLIDINONE ANTIBIOTICS PERTURB THE RIBOSOMAL PEPTIDYL-TRANSFERASE CENTER AND EFFECT TRNA POSITIONING
Source: Compound RRNA-23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (2260, 2297), (2263, 2293)
Primary structure ('_': anchors) _UUU_-_GA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-exo, 5: C4'-exo, 8: C4'-exo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 1 7 →
3 2 3 ↑
4 5 8 &larr
5 6 7 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis y
2 2 7 Watson-Crick/Watson-Crick cis
3 3 5 Hoogsteen/Sugar cis y
4 3 6 Watson-Crick/Watson-Crick cis
5 5 6 Watson-Crick/Watson-Crick cis y
6 5 8 Watson-Crick/O2' ?
7 7 8 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters