Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'19-Segment pdb3dll1X.i1675-1695
Source: [PDB-id:chain] 3dll:X (&rarr PDB)
Source: Information THE OXAZOLIDINONE ANTIBIOTICS PERTURB THE RIBOSOMAL PEPTIDYL-TRANSFERASE CENTER AND EFFECT TRNA POSITIONING
Source: Compound RRNA-23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (1675, 1695)
Primary structure ('_': anchors) _ACUGUUUACCAAAAUCACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C4'-exo, 10: O4'-endo, 13: C2'-exo, 15: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 5 6 ↑
3 5 18 →
4 8 12 &larr
5 14 16 ↑
6 16 17 ↑
7 17 18 ↑
8 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 19 Sugar/Hoogsteen trans y
2 5 17 Watson-Crick/Watson-Crick cis
3 6 16 Watson-Crick/Watson-Crick cis
4 7 14 Hoogsteen/Watson-Crick trans
5 8 13 Bifurcated/O2' trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters