Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Hairpin pdb3dll1X.e279-294
Source: [PDB-id:chain] 3dll:X (&rarr PDB)
Source: Information THE OXAZOLIDINONE ANTIBIOTICS PERTURB THE RIBOSOMAL PEPTIDYL-TRANSFERASE CENTER AND EFFECT TRNA POSITIONING
Source: Compound RRNA-23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (279, 294)
Primary structure ('_': anchors) _CUCAGAAGGUGAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C4'-exo, 6: C4'-exo, 12: C4'-exo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn, 15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 6 16
3 7 8
4 8 9
5 9 10
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 2 6 Watson-Crick/Watson-Crick cis
3 6 7 Hoogsteen/O2' ?
4 9 15 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters