Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Hairpin pdb3dll1X.e2455-2471
Source: [PDB-id:chain] 3dll:X (&rarr PDB)
Source: Information THE OXAZOLIDINONE ANTIBIOTICS PERTURB THE RIBOSOMAL PEPTIDYL-TRANSFERASE CENTER AND EFFECT TRNA POSITIONING
Source: Compound RRNA-23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (2455, 2471)
Primary structure ('_': anchors) _UAGUACGAGAGGACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 4: C4'-exo, 10: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 3 5 →
4 4 13 &larr
5 6 7 ↑
6 6 14 →
7 7 8 ↑
8 8 12 →
9 9 10 ↑
10 10 11 ↑
11 11 12 ↑
12 12 13 ↑
13 14 15 ↑
14 15 16 ↑
15 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 16 Watson-Crick/Watson-Crick cis y
3 3 15 O2'/Bifurcated ?
4 4 13 Watson-Crick/O2' ?
5 4 14 O2'/Bifurcated ?
6 5 14 Hoogsteen/Watson-Crick trans
7 6 13 Sugar/Hoogsteen trans
8 7 12 Watson-Crick/Watson-Crick cis
9 8 9 Hoogsteen/O2' ?
10 8 11 O2'/Bifurcated trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters