Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-1-Internal Loop pdb3dkn1F.n15-23
Source: [PDB-id:chain] 3dkn:F (&rarr PDB)
Source: Information SEC61 IN THE CANINE RIBOSOME-CHANNEL COMPLEX FROM THE ENDOPLASMIC RETICULUM
Source: Compound RNA (32-MER)
Source: Resolution 8.70 ANGSTROMS.
Position (11, 25), (15, 23)
Primary structure ('_': anchors) _CAC_-_G_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 5 ↑
4 6 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick trans
3 4 8 O2'/Watson-Crick ?
4 5 6 Watson-Crick/Watson-Crick cis
5 6 7 Bifurcated/O2' ?
6 7 8 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters