Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb3dkn1F.e16-22
Source: [PDB-id:chain] 3dkn:F (&rarr PDB)
Source: Information SEC61 IN THE CANINE RIBOSOME-CHANNEL COMPLEX FROM THE ENDOPLASMIC RETICULUM
Source: Compound RNA (32-MER)
Source: Resolution 8.70 ANGSTROMS.
Position (16, 22)
Primary structure ('_': anchors) _CUGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-endo, 2: C2'-endo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 4 5
3 5 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 6 7 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters