Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb3dis1A.e124-130
Source: [PDB-id:chain] 3dis:A (&rarr PDB)
Source: Information CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH IN FREE FORM
Source: Compound RNA (174-MER)
Source: Resolution 3.10 ANGSTROMS.
Position (124, 130)
Primary structure ('_': anchors) _GAAUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo, 7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 6 ↑
4 6 7 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/O2' ?
3 2 5 O2'/Bifurcated ?
4 4 5 Hoogsteen/O2' cis y
5 6 7 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters