Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-3-0-1-4-Multiloop pdb3dim1A.m1-174
Source: [PDB-id:chain] 3dim:A (&rarr PDB)
Source: Information CRYSTALLIZATION OF THE THERMOTOGA MARITIMA LYSINE RIBOSWITCH BOUND TO LYSINE, CS+ SOAK
Source: Compound RNA (174-MER)
Source: Resolution 2.90 ANGSTROMS.
Position (9, 166), (14, 78), (82, 113), (114, 140), (142, 161)
Primary structure ('_': anchors) _AGGC_-_CGA_-__-_G_-_AGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C1'-exo, 4: C1'-exo, 5: C1'-exo, 6: C2'-exo, 8: C2'-endo, 9: C1'-exo, 18: C2'-endo, 19: C2'-endo, 20: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 4: syn, 9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 4 6 ↑
4 6 8 →
5 9 11 ↑
6 13 15 →
7 15 16 ↑
8 17 18 ↑
9 19 21 →
10 21 22 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 22 Watson-Crick/Watson-Crick cis
2 2 21 Watson-Crick/Watson-Crick cis
3 3 8 O2'/Watson-Crick ?
4 3 19 Watson-Crick/Hoogsteen trans
5 4 8 Watson-Crick/Watson-Crick cis
6 6 7 Watson-Crick/Watson-Crick cis
7 6 10 Watson-Crick/O2' trans y
8 9 19 Bifurcated/O2' ?
9 11 12 Watson-Crick/Watson-Crick cis
10 13 14 Watson-Crick/Watson-Crick cis
11 15 18 Watson-Crick/Watson-Crick cis
12 15 19 Hoogsteen/Sugar trans y
13 16 17 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters