Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Segment pdb3df11A.i488-496
Source: [PDB-id:chain] 3df1:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH HYGROMYCIN B. THIS FILE CONTAINS THE 30S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH HYGROMYCIN B BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (488, 496)
Primary structure ('_': anchors) _AGAAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 5: C4'-exo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 2 3 →
3 4 5 ↓
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 6 Hoogsteen/Sugar cis y
2 5 7 Hoogsteen/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters