Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb3deg1J.e7-13
Source: [PDB-id:chain] 3deg:J (&rarr PDB)
Source: Information COMPLEX OF ELONGATING ESCHERICHIA COLI 70S RIBOSOME AND EF4(LEPA)-GMPPNP
Source: Compound 50S RNA HELIX 71
Source: Resolution NULL ANGSTROMS.
Position (7, 13)
Primary structure ('_': anchors) _UAAGU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-endo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 O2'/Watson-Crick ?
2 1 7 Watson-Crick/Watson-Crick cis y
3 2 4 O2'/Hoogsteen ?
4 2 5 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters