Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb3d5a1Y.e54-62
Source: [PDB-id:chain] 3d5a:Y (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR TRANSLATION TERMINATION ON THE 70S RIBOSOME. THIS FILE CONTAINS THE 30S SUBUNIT, RELEASE FACTOR 1 (RF1), TWO TRNA, AND MRNA MOLECULES OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AS DESCRIBED IN REMARK 400.
Source: Compound P AND E-SITE TRNA(FMET)
Source: Resolution 3.21 ANGSTROMS.
Position (54, 62)
Primary structure ('_': anchors) _UUCAAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo, 6: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 6 9 ↑
4 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick trans y
3 3 5 Hoogsteen/O2' ?
4 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters