Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb3d2v1B.n51-64
Source: [PDB-id:chain] 3d2v:B (&rarr PDB)
Source: Information STRUCTURE OF THE EUKARYOTIC TPP-SPECIFIC RIBOSWITCH BOUND TO THE ANTIBACTERIAL COMPOUND PYRITHIAMINE PYROPHOSPHATE
Source: Compound TPP-SPECIFIC RIBOSWITCH
Source: Resolution 2.00 ANGSTROMS.
Position (47, 68), (51, 64)
Primary structure ('_': anchors) _GAA_-_CGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 4: C2'-endo, 6: C2'-exo, 8: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3 &larr
3 3 5
4 6 7
5 7 8 &larr
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 8 Hoogsteen/Watson-Crick cis
3 3 7 Watson-Crick/Watson-Crick trans y
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters