Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb3d2g1B.e17-22
Source: [PDB-id:chain] 3d2g:B (&rarr PDB)
Source: Information STRUCTURAL BASIS OF THIAMINE PYROPHOSPHATE ANALOGUES BINDING TO THE EUKARYOTIC RIBOSWITCH
Source: Compound TPP-SPECIFIC RIBOSWITCH
Source: Resolution 2.25 ANGSTROMS.
Position (17, 22)
Primary structure ('_': anchors) _UUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 2: C2'-endo, 3: C3'-exo, 5: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3 &larr
2 3 4 ↓
3 5 6 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 4 Bifurcated/O2' ?
3 3 5 Hoogsteen/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters