Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-4-Internal Loop pdb3cunFC.n62-84
Source: [PDB-id:chain] 3cun:C (&rarr PDB)
Source: Information AMINOACYL-TRNA SYNTHETASE RIBOZYME
Source: Compound RNA (92-MER)
FLIPPED INTERNAL
Source: Resolution 3.00 ANGSTROMS.
Position (57, 89), (62, 84)
Primary structure ('_': anchors) _CGCA_-_GGUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 2 10
4 3 4
5 4 5
6 4 8
7 7 8
8 8 9
9 9 10
10 10 11
11 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis y
2 2 11 Watson-Crick/Watson-Crick cis
3 3 10 Watson-Crick/Watson-Crick cis
4 6 7 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters