Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-5-Internal Loop pdb3cun1D.n26-43
Source: [PDB-id:chain] 3cun:D (&rarr PDB)
Source: Information AMINOACYL-TRNA SYNTHETASE RIBOZYME
Source: Compound RNA (92-MER)
Source: Resolution 3.00 ANGSTROMS.
Position (22, 49), (26, 43)
Primary structure ('_': anchors) _AGG_-_UAUUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 4 5 ↑
3 4 8 →
4 6 7 ↑
5 8 9 ↑
6 10 11 ↑
7 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Watson-Crick/Watson-Crick cis y
3 3 10 Watson-Crick/Watson-Crick trans y
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters