Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb3cul1C.e69-77
Source: [PDB-id:chain] 3cul:C (&rarr PDB)
Source: Information AMINOACYL-TRNA SYNTHETASE RIBOZYME
Source: Compound RNA (92-MER)
Source: Resolution 2.80 ANGSTROMS.
Position (69, 77)
Primary structure ('_': anchors) _UUCGAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 5 6
5 6 8
6 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis
3 3 5 Hoogsteen/O2' ?
4 6 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters