Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-6-Internal Loop pdb3cmeF0.n267-366
Source: [PDB-id:chain] 3cme:0 (&rarr PDB)
Source: Information THE STRUCTURE OF CA AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 50S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.95 ANGSTROMS.
Position (272, 361), (279, 357)
Primary structure ('_': anchors) _UGC_-_UCUCAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 3 10 &larr
3 4 5
4 6 7
5 7 8
6 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 11 Bifurcated/O2' ?
3 3 9 Watson-Crick/Bifurcated cis y
4 4 7 Watson-Crick/Watson-Crick cis
5 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters