Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'11-Hairpin pdb3cme10.e2163-2175
Source: [PDB-id:chain] 3cme:0 (&rarr PDB)
Source: Information THE STRUCTURE OF CA AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 50S RIBOSOMAL RNA
Source: Resolution 2.95 ANGSTROMS.
Position (2163, 2175)
Primary structure ('_': anchors) _GAAAAGAUAUC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 4: C4'-exo, 12: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3 &larr
3 3 9
4 6 7
5 7 8
6 8 9
7 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 10 O2'/Bifurcated trans
3 4 9 Watson-Crick/Watson-Crick trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters