Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb3cma10.e2369-2377
Source: [PDB-id:chain] 3cma:0 (&rarr PDB)
Source: Information THE STRUCTURE OF CCA AND CCA-PHE-CAP-BIO BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.80 ANGSTROMS.
Position (2369, 2377)
Primary structure ('_': anchors) _GCACAUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-endo, 3: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 5 &larr
3 4 5 ↑
4 6 7 ↑
5 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 O2'/Bifurcated ?
2 1 9 Watson-Crick/Watson-Crick cis
3 2 7 O2'/Watson-Crick ?
4 2 8 Bifurcated/O2' trans
5 3 5 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters