Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-7-Internal Loop pdb3cf5FX.n974-1031
Source: [PDB-id:chain] 3cf5:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC THIOSTREPTON BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RRNA-23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (966, 1035), (974, 1031)
Primary structure ('_': anchors) _CGA_-_AUAGACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C2'-exo, 9: C2'-exo, 10: C4'-exo, 11: C4'-exo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 3 10 &larr
3 4 5 ↑
4 6 7 ↑
5 7 8 ↑
6 8 9 ↑
7 13 14 &larr
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 O2'/Sugar ?
2 1 9 O2'/Bifurcated ?
3 1 14 Watson-Crick/Watson-Crick cis
4 2 10 Hoogsteen/Sugar trans y
5 3 9 Bifurcated/O2' ?
6 3 10 Bifurcated/O2' ?
7 5 6 Watson-Crick/Watson-Crick cis y
8 10 12 C/O2' ?
9 11 12 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters