Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-3-Internal Loop pdb3cf51X.n957-1044
Source: [PDB-id:chain] 3cf5:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC THIOSTREPTON BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RRNA-23S RIBOSOMAL RNA
Source: Resolution 3.30 ANGSTROMS.
Position (966, 1035), (974, 1031)
Primary structure ('_': anchors) _AUAGACA_-_CGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 4: C4'-exo, 5: C4'-exo, 6: C2'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 5 12 &larr
3 6 7 ↑
4 7 8 ↑
5 8 9 ↑
6 10 11 ↑
7 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 3 4 Bifurcated/O2' ?
3 3 5 C/O2' ?
4 5 12 Bifurcated/O2' ?
5 5 13 Hoogsteen/Sugar trans y
6 6 12 Bifurcated/O2' ?
7 6 14 O2'/Bifurcated ?
8 9 10 Watson-Crick/Watson-Crick cis y
9 13 14 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters