Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Segment pdb3cf51X.i966-974
Source: [PDB-id:chain] 3cf5:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC THIOSTREPTON BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RRNA-23S RIBOSOMAL RNA
Source: Resolution 3.30 ANGSTROMS.
Position (966, 974)
Primary structure ('_': anchors) _AUAGACA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 4: C4'-exo, 5: C4'-exo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 6 7
3 7 8
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 4 Bifurcated/O2' ?
2 3 5 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters