Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb3cf51X.i930-953
Source: [PDB-id:chain] 3cf5:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC THIOSTREPTON BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RRNA-23S RIBOSOMAL RNA
Source: Resolution 3.30 ANGSTROMS.
Position (930, 953)
Primary structure ('_': anchors) _UAAAUGAUCGCUCAGUGGUUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 6: C2'-exo, 7: C4'-exo, 14: C2'-exo, 16: C4'-exo, 17: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 5 7 ↑
3 7 8 ↑
4 8 9 ↑
5 10 11 ↑
6 11 12 ↑
7 15 17 ↑
8 17 18 ↑
9 18 19 &larr
10 22 23 ↑
11 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 13 15 Sugar/O2' ?
2 16 17 Hoogsteen/Sugar cis
3 16 18 Hoogsteen/O2' ?
4 17 18 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters