Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Segment pdb3cf51X.i46-53
Source: [PDB-id:chain] 3cf5:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC THIOSTREPTON BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RRNA-23S RIBOSOMAL RNA
Source: Resolution 3.30 ANGSTROMS.
Position (46, 53)
Primary structure ('_': anchors) _GAUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 5: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7
2 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 3 Sugar/O2' cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters