Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-Segment pdb3ccs19.i50-59
Source: [PDB-id:chain] 3ccs:9 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2482A
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 2.95 ANGSTROMS.
Position (50, 59)
Primary structure ('_': anchors) _AAGAUAAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 5 ↑
4 7 8 &larr
5 8 9 →
6 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 3 Hoogsteen/Sugar cis y
2 5 7 Hoogsteen/Sugar cis y
3 9 10 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters