Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb3ccs10.i1154-1177
Source: [PDB-id:chain] 3ccs:0 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2482A
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.95 ANGSTROMS.
Position (1154, 1177)
Primary structure ('_': anchors) _CUAAGAAAAGCGUAACAGCUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 6: C4'-exo, 7: C2'-exo, 8: C2'-endo, 9: C2'-endo, 22: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 6: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 &larr
4 7 9 ↑
5 7 23 →
6 10 11 ↑
7 11 12 ↑
8 12 13 ↑
9 15 16 ↑
10 16 17 ↑
11 17 18 ↑
12 18 19 ↑
13 19 20 ↑
14 20 21 ↑
15 22 23 ↑
16 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 6 Watson-Crick/Watson-Crick trans y
2 3 4 Hoogsteen/O2' ?
3 3 5 O2'/Watson-Crick ?
4 6 23 Bifurcated/O2' ?
5 9 10 Hoogsteen/Sugar cis y
6 10 21 Watson-Crick/Watson-Crick cis
7 12 19 Watson-Crick/Watson-Crick cis
8 13 18 Bifurcated/O2' trans
9 14 16 O2'/Hoogsteen ?
10 14 17 Hoogsteen/Sugar trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters