Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb3ccs10.e128-134
Source: [PDB-id:chain] 3ccs:0 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION G2482A
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.95 ANGSTROMS.
Position (128, 134)
Primary structure ('_': anchors) _UUCGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-endo, 5: C4'-exo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn, 5: syn, 6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 4
3 5 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 5 Watson-Crick/Watson-Crick trans y
3 3 4 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters