Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-5-Internal Loop pdb3ccrF0.n951-978
Source: [PDB-id:chain] 3ccr:0 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION A2488C. DENSITY FOR ANISOMYCIN IS VISIBLE BUT NOT INCLUDED IN THE MODEL.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.00 ANGSTROMS.
Position (952, 977), (958, 973)
Primary structure ('_': anchors) _AAA_-_CGACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 4 ↑
2 2 3 ↑
3 4 6 →
4 6 7 ↑
5 7 8 ↑
6 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Bifurcated/O2' ?
2 1 8 O2'/Watson-Crick cis y
3 1 12 Watson-Crick/Watson-Crick cis
4 4 7 Watson-Crick/Watson-Crick cis y
5 4 11 Hoogsteen/Watson-Crick trans
6 5 6 Watson-Crick/Watson-Crick cis
7 9 12 Bifurcated/O2' trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters