Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb3cclF0.n2046-2523
Source: [PDB-id:chain] 3ccl:0 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION U2535C. DENSITY FOR ANISOMYCIN IS VISIBLE BUT NOT INCLUDED IN MODEL.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.90 ANGSTROMS.
Position (2052, 2517), (2056, 2514)
Primary structure ('_': anchors) _UA_-_GGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 5 6
5 7 8
6 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis
3 3 6 Watson-Crick/Watson-Crick cis
4 3 7 Watson-Crick/Watson-Crick cis y
5 4 5 Watson-Crick/Watson-Crick cis
6 6 7 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters