Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb3ccl10.n1884-1897
Source: [PDB-id:chain] 3ccl:0 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION U2535C. DENSITY FOR ANISOMYCIN IS VISIBLE BUT NOT INCLUDED IN MODEL.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.90 ANGSTROMS.
Position (1878, 1903), (1884, 1897)
Primary structure ('_': anchors) _GAACA_-_ACGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		11: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		11: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 12 →
4 4 5 ↑
5 5 6 ↑
6 6 7 ↑
7 8 9 ↑
8 9 10 ↑
9 10 11 &larr
10 12 13 ↑
11 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 12 O2'/Watson-Crick ?
3 2 13 Bifurcated/O2' trans
4 6 9 Watson-Crick/Watson-Crick cis y
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters