Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-8-Internal Loop pdb3ccj10.n763-886
Source: [PDB-id:chain] 3ccj:0 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION C2534U
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.70 ANGSTROMS.
Position (757, 895), (763, 886)
Primary structure ('_': anchors) _CGAAU_-_CAACAGCU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 9: C2'-endo, 10: C2'-endo, 14: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 4 5 ↑
3 4 13 →
4 6 7 ↑
5 6 11 →
6 8 9 &larr
7 11 12 ↑
8 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 16 Watson-Crick/Watson-Crick cis y
3 3 15 Watson-Crick/Watson-Crick cis
4 4 12 Watson-Crick/Hoogsteen trans
5 5 11 Watson-Crick/Hoogsteen trans
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters