Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'27-Segment pdb3ccj10.i1149-1177
Source: [PDB-id:chain] 3ccj:0 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION C2534U
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.70 ANGSTROMS.
Position (1149, 1177)
Primary structure ('_': anchors) _ACCCUCUAAGAAAAGCGUAACAGCUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C2'-endo, 8: C4'-exo, 10: C4'-exo, 13: C2'-endo, 14: C3'-exo, 23: C4'-exo, 27: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		10: syn, 11: syn, 13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 13 →
4 6 7 ↑
5 7 8 ↑
6 9 10 &larr
7 12 14 ↑
8 15 16 ↑
9 16 17 ↑
10 17 18 ↑
11 20 21 ↑
12 21 22 ↑
13 23 24 ↑
14 24 25 ↑
15 26 27 ↑
16 27 28 ↑
17 28 29 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 13 O2'/Bifurcated ?
2 4 5 Hoogsteen/Watson-Crick cis y
3 7 11 Watson-Crick/Watson-Crick trans y
4 8 10 O2'/Watson-Crick ?
5 11 28 Bifurcated/O2' ?
6 14 15 Hoogsteen/O2' cis y
7 15 26 Watson-Crick/Watson-Crick cis y
8 18 23 Bifurcated/O2' trans
9 19 21 O2'/Hoogsteen ?
10 19 22 O2'/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters