Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb3cce10.n2585-2625
Source: [PDB-id:chain] 3cce:0 (&rarr PDB)
Source: Information STRUCTURE OF ANISOMYCIN RESISTANT 50S RIBOSOMAL SUBUNIT: 23S RRNA MUTATION U2535A
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.75 ANGSTROMS.
Position (2588, 2622), (2592, 2618)
Primary structure ('_': anchors) _GUA_-_GUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 7 &larr
3 4 5 ↑
4 4 8 →
5 6 7 ↑
6 8 9 ↑
7 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 8 O2'/Watson-Crick ?
3 2 9 Hoogsteen/Sugar trans
4 3 7 Bifurcated/O2' ?
5 4 7 Sugar/Hoogsteen trans y
6 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters