Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb3cc4F0.n792-809
Source: [PDB-id:chain] 3cc4:0 (&rarr PDB)
Source: Information CO-CRYSTAL STRUCTURE OF ANISOMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.70 ANGSTROMS.
Position (787, 815), (792, 809)
Primary structure ('_': anchors) _GGAAG_-_UGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 5: C2'-endo, 11: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3 ↑
2 3 4 ↑
3 4 10 →
4 5 6 ↑
5 5 11 &larr
6 6 7 ↑
7 8 9 ↑
8 9 10 ↑
9 11 12 ↑
10 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 12 Watson-Crick/Watson-Crick cis
3 4 11 Hoogsteen/Sugar trans
4 5 10 Bifurcated/O2' trans
5 5 11 O2'/Bifurcated ?
6 6 9 O2'/Bifurcated trans
7 6 10 Watson-Crick/O2' ?
8 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters