Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Hairpin pdb3cc410.e317-332
Source: [PDB-id:chain] 3cc4:0 (&rarr PDB)
Source: Information CO-CRYSTAL STRUCTURE OF ANISOMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.70 ANGSTROMS.
Position (317, 332)
Primary structure ('_': anchors) _GAUACAGGGUGACA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-endo, 5: C2'-endo, 6: C2'-endo, 12: C2'-endo, 13: C2'-endo, 14: C2'-endo, 15: C2'-endo, 16: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn, 13: syn, 15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 2 16
3 6 16
4 7 8
5 8 9
6 9 10
7 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 2 6 Watson-Crick/Watson-Crick cis
3 11 15 Hoogsteen/Watson-Crick trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters