Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-3-Internal Loop pdb3cc2F0.n1424-1459
Source: [PDB-id:chain] 3cc2:0 (&rarr PDB)
Source: Information THE REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION WITH RRNA SEQUENCE FOR THE 23S RRNA AND GENOME-DERIVED SEQUENCES FOR R-PROTEINS
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.40 ANGSTROMS.
Position (1425, 1458), (1429, 1452)
Primary structure ('_': anchors) _GAAAU_-_UAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo, 4: C2'-endo, 5: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 5
2 2 3 &larr
3 5 10
4 6 7
5 8 9
6 9 10
7 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 5 11 Hoogsteen/Watson-Crick trans
3 6 9 O2'/Bifurcated trans
4 6 10 Watson-Crick/O2' ?
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters