Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Segment pdb3cc210.i1778-1791
Source: [PDB-id:chain] 3cc2:0 (&rarr PDB)
Source: Information THE REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION WITH RRNA SEQUENCE FOR THE 23S RRNA AND GENOME-DERIVED SEQUENCES FOR R-PROTEINS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.40 ANGSTROMS.
Position (1778, 1791)
Primary structure ('_': anchors) _CGCAGUGACUCG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-exo, 8: C2'-endo, 13: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 6 →
2 4 5 ↑
3 9 10 ↑
4 10 11 ↑
5 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 6 Watson-Crick/Watson-Crick cis
2 3 5 Hoogsteen/O2' ?
3 3 6 O2'/Watson-Crick ?
4 7 11 Watson-Crick/Watson-Crick cis y
5 8 10 Bifurcated/O2' ?
6 9 10 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters