Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb3bt71C.e5-15
Source: [PDB-id:chain] 3bt7:C (&rarr PDB)
Source: Information STRUCTURE OF E. COLI 5-METHYLURIDINE METHYLTRANSFERASE TRMA IN COMPLEX WITH 19 NUCLEOTIDE T-ARM ANALOGUE
Source: Compound RNA (5'-D(P*GP*CP*UP*GP*UP*GP*(5MU)
Source: Resolution 2.43 ANGSTROMS.
Position (5, 15)
Primary structure ('_': anchors) _GUUCGAUCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 3: C4'-exo, 7: C2'-exo, 8: O4'-exo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 10: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 7 &larr
3 2 11 →
4 5 6 ↑
5 6 7 ↑
6 10 11 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 7 Bifurcated/O2' ?
3 2 10 Hoogsteen/Watson-Crick cis y
4 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters