Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb3bo41B.n152-172
Source: [PDB-id:chain] 3bo4:B (&rarr PDB)
Source: Information A RELAXED ACTIVE SITE FOLLOWING EXON LIGATION BY A GROUP I INTRON
Source: Compound GROUP I INTRON P9
Source: Resolution 3.33 ANGSTROMS.
Position (154, 170), (158, 167)
Primary structure ('_': anchors) _UAA_-_AU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: O4'-endo, 7: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 6 &larr
3 3 7 →
4 4 5 ↑
5 7 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 7 Hoogsteen/Watson-Crick trans
3 5 6 Watson-Crick/Watson-Crick cis
4 5 8 Watson-Crick/Sugar trans y
5 7 8 O2'/Sugar ?
6 7 9 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters