Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-5-Internal Loop pdb3bo2FB.n91-131
Source: [PDB-id:chain] 3bo2:B (&rarr PDB)
Source: Information A RELAXED ACTIVE SITE FOLLOWING EXON LIGATION BY A GROUP I INTRON
Source: Compound GROUP I INTRON P9
FLIPPED INTERNAL
Source: Resolution 3.31 ANGSTROMS.
Position (93, 129), (99, 124)
Primary structure ('_': anchors) _UGAA_-_AAGCU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 8: C2'-exo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 8
5 5 6
6 7 8
7 9 10
8 10 11
9 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 11 Watson-Crick/Watson-Crick cis y
3 3 10 Watson-Crick/Watson-Crick cis
4 4 9 Watson-Crick/Watson-Crick cis
5 5 8 Watson-Crick/Watson-Crick cis y
6 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters